Thank you so much. I've tried -fo prepc and it worked. I believe -fo mol2
will also work. Thanks a lot.
Joyce
On Wed, Nov 7, 2012 at 9:36 AM, David A Case <case.biomaps.rutgers.edu>wrote:
> On Tue, Nov 06, 2012, Yulin Huang wrote:
>
> > I have two ligands with identical atom names and orders for the
> > corresponding same atoms. I place the different atom at the end of mol2
> > files. After I ran Antechamber as the follows,then prep files with
> > different orders for corresponding same atoms were generated.
> >
> > antechamber -i *.lig.mol2 -fi mol2 -o *.lig.ante.pdb -fo pdb
> > antechamber -i *.lig.mol2 -fi mol2 -o *.lig.ante.prep -fo prepi
> ^^^^^^^^^^
>
> Try using "-fo mol2" here, to avoid the prep format.
>
> ....dac
>
>
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--
Yulin "Joyce" Huang
Ph.D Candidate
Computational Chemistry (CADD)
Advisor: Dr. Robert C. Rizzo
State University of New York at Stony Brook
Stony Brook NY,11790
Office: (631)632-8519
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Received on Wed Nov 07 2012 - 07:00:04 PST
