Dear All,
I install the Amber12 and AmberTools12 as follows
Machine OS: CentOS release 5.4 (Final)
$: cd /share/apps
$: tar xvfj AmberTools12.tar.bz2
$: tar xvfj Amber12.tar.bz2
$: export AMBERHOME=/share/apps/amber12;
$: yum install gcc flex tcsh zlib-devel bzip2-devel libXt-devel \
libXt-devel libXext-devel libXdmcp-devel
$: cd $AMBERHOME
$: ./configure intel
$: make install;
$: make test; # All test PASSED
$: ./configure -mpi intel;
$: make install;
# Error I encounter
a - AmberNetcdf.o
ranlib /share/apps/amber12/lib/libsff.a
mpicc -o /share/apps/amber12/bin/hcp_getpdb hcp_getpdb.c
make[2]: Leaving directory `/share/apps/amber12/AmberTools/src/sff'
(cd nab && make install )
make[2]: Entering directory `/share/apps/amber12/AmberTools/src/nab'
mpicc -DCC='"mpicc"' -DCPP='"ucpp -l"' -DFLIBS='"-lsff_mpi -lpbsa
-larpack -L/share/apps/amber12/lib -lnetcdf -Wl,--start-group
/opt/intel/mkl/10.2.5.035/lib/em64t/libmkl_intel_lp64.a
/opt/intel/mkl/10.2.5.035/lib/em64t/libmkl_sequential.a
/opt/intel/mkl/10.2.5.035/lib/em64t/libmkl_core.a-Wl,--end-group-lpthread
-L/opt/intel/Compiler/11.1/072/lib/intel64/ -lifport -lifcore -lsvml "' \
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ
-DMPI -I/opt/intel/mkl/10.2.5.035/include \
-shared-intel -o /share/apps/amber12/bin/mpinab nab.c
icc: error #10236: File not found: '"'
nab.c(165): error: missing closing quote
amberhome, CPP, cppstring, amberhome,
^
nab.c(272): error: missing closing quote
sprintf( word, " %s ", FLIBS );
^
compilation aborted for nab.c (code 2)
make[2]: *** [/share/apps/amber12/bin/mpinab] Error 1
make[2]: Leaving directory `/share/apps/amber12/AmberTools/src/nab'
make[1]: *** [nabonly] Error 2
make[1]: Leaving directory `/share/apps/amber12/AmberTools/src'
make: [nabonly] Error 2 (ignored)
Could anyone tell me how to solve this proble?
Thank you very much!
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Received on Wed Oct 31 2012 - 05:00:03 PDT
