(unknown charset) [AMBER] Amber12 Parrell Installation Error

From: (unknown charset) chenkai_szpku <chenkai_szpku.foxmail.com>
Date: Wed, 31 Oct 2012 19:52:01 +0800

   Dear All,

        I install the Amber12 and AmberTools12 as follows

        Machine OS: CentOS release 5.4 (Final)

        $: cd /share/apps

        $: tar xvfj AmberTools12.tar.bz2

        $: tar xvfj Amber12.tar.bz2

        $: export AMBERHOME=/share/apps/amber12;

        $: yum install gcc flex tcsh zlib-devel bzip2-devel libXt-devel \

                   libXt-devel libXext-devel libXdmcp-devel

        $: cd $AMBERHOME

        $: ./configure intel

        $: make install;

        $: make test; # All test PASSED

        $: ./configure -mpi intel;

        $: make install;

        # Error I encounter

       a - AmberNetcdf.o
   ranlib /share/apps/amber12/lib/libsff.a
   mpicc -o /share/apps/amber12/bin/hcp_getpdb hcp_getpdb.c
   make[2]: Leaving directory `/share/apps/amber12/AmberTools/src/sff'
   (cd nab && make install )
   make[2]: Entering directory `/share/apps/amber12/AmberTools/src/nab'
   mpicc -DCC='"mpicc"' -DCPP='"ucpp -l"' -DFLIBS='"-lsff_mpi -lpbsa
   -larpack -L/share/apps/amber12/lib -lnetcdf -Wl,--start-group
   /opt/intel/mkl/10.2.5.035/lib/em64t/libmkl_intel_lp64.a
   /opt/intel/mkl/10.2.5.035/lib/em64t/libmkl_sequential.a
   /opt/intel/mkl/10.2.5.035/lib/em64t/libmkl_core.a-Wl,--end-group-lpthread
   -L/opt/intel/Compiler/11.1/072/lib/intel64/ -lifport -lifcore -lsvml "' \
                     -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ
   -DMPI -I/opt/intel/mkl/10.2.5.035/include \
                   -shared-intel -o /share/apps/amber12/bin/mpinab nab.c
   icc: error #10236: File not found: '"'
   nab.c(165): error: missing closing quote
                                   amberhome, CPP, cppstring, amberhome,
                                              ^

   nab.c(272): error: missing closing quote
                   sprintf( word, " %s ", FLIBS );
                                          ^

   compilation aborted for nab.c (code 2)
   make[2]: *** [/share/apps/amber12/bin/mpinab] Error 1
   make[2]: Leaving directory `/share/apps/amber12/AmberTools/src/nab'
   make[1]: *** [nabonly] Error 2
   make[1]: Leaving directory `/share/apps/amber12/AmberTools/src'
   make: [nabonly] Error 2 (ignored)



         Could anyone tell me how to solve this proble?

         Thank you very much!





   
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Oct 31 2012 - 05:00:03 PDT
Custom Search