[AMBER] Trajectory Clustering

From: Chiara Pallara <chiara.pallara.bsc.es>
Date: Fri, 26 Oct 2012 14:08:38 +0200

I clustered the frames of my trajectory into 10 clusters with the
command cluster of ptraj module.
I applied the averagelinkage algorithm on the alpha carbons of my sistem
using this command:

cluster out [outfile] representative pdb average pdb averagelinkage
clusters 10 rms .CA

Now I would to know the MD times of the each cluster representative and
its members. Do you know where I can find this information? I did not
find nothig about in the output file.

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Received on Fri Oct 26 2012 - 05:30:02 PDT
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