Hi,
I clustered the frames of my trajectory into 10 clusters with the
command cluster of ptraj module.
I applied the averagelinkage algorithm on the alpha carbons of my sistem
using this command:
cluster out [outfile] representative pdb average pdb averagelinkage
clusters 10 rms .CA
Now I would to know the MD times of the each cluster representative and
its members. Do you know where I can find this information? I did not
find nothig about in the output file.
Thanks
Chiara
WARNING / LEGAL TEXT: This message is intended only for the use of the
individual or entity to which it is addressed and may contain
information which is privileged, confidential, proprietary, or exempt
from disclosure under applicable law. If you are not the intended
recipient or the person responsible for delivering the message to the
intended recipient, you are strictly prohibited from disclosing,
distributing, copying, or in any way using this message. If you have
received this communication in error, please notify the sender and
destroy and delete any copies you may have received.
http://www.bsc.es/disclaimer
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Oct 26 2012 - 05:30:02 PDT
