On Wed, Oct 17, 2012, Abderezak-EXT.Mekfouldji.sanofi.com wrote:
>
> I'm installing Amber 10 on a new Server (xsnl10f300f.pharma.aventis.com)
> but I got compilation errors which I do not know the cause. I do not
> know if there is a step missing in my installation. Please find attached
> the installation steps I followed with configuration and compilation
> results.
For this error:
> make[1]: Entering directory `/local/app/amber/amber10/src/nab'
> ./nab -c -DDATDIR='"/local/app/amber/amber10/dat"' na_anal.nab
> na_anal.c: In function ???helixanal???:
> na_anal.c:2417: error: expected ???)??? before ???is???
> na_anal.c:2417: error: stray ???\??? in program
> na_anal.c:2417:41: warning: missing terminating " character
> na_anal.c:2417: error: missing terminating " character
> na_anal.c:2419: error: expected ???;??? before ???}??? token
Consider the following patch (line numbers look different from AmberTools
1.2, but the idea is there:
diff --git a/AmberTools/src/nab/na_anal.nab b/AmberTools/src/nab/na_anal.nab
index 062bf89..57e08d8 100644
--- a/AmberTools/src/nab/na_anal.nab
+++ b/AmberTools/src/nab/na_anal.nab
.. -1572,7 +1572,7 .. int basepairanal( molecule m, int PrimaryStrand,
int
NotValidAnswer = FALSE;
}
else{
- printf( "\"%s\" is not a valid answer.\n", WCAnswer );
+ printf( "%s is not a valid answer.\n", WCAnswer );
NotValidAnswer = TRUE;
}
}
.. -2185,7 +2185,7 .. int helixanal( molecule in_mol )
SingleStranded = TRUE;
}
else{
- printf( "\"%s\" is not a valid answer.\n",
Paral
+ printf( "%s is not a valid answer.\n",
ParallelA
NotValidAnswer = TRUE;
}
}
For the error message "cannot find -lvml", you could type "lvml" into the
search engine at the Amber Mailing list archive. That would lead you to this
message:
http://archive.ambermd.org/200811/0185.html
...good luck....dac
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Received on Wed Oct 17 2012 - 07:00:07 PDT
