Re: [AMBER] Errors in Amber12 installation

From: Sajeewa Pemasinghe <sajeewasp.gmail.com>
Date: Mon, 8 Oct 2012 20:30:25 -0400

Hi Ben,

The version is 12.6

Sajeewa

On Mon, Oct 8, 2012 at 7:46 PM, Ben Roberts <ben.roberts.geek.nz> wrote:

> What version of the PGI compilers are you using, Sajeewa? I've had
> problems compiling Amber 12 with PGI 12.5.
>
> Regards,
> Ben
>
> On 9/10/2012, at 9:33 AM, David A Case wrote:
>
> > On Mon, Oct 08, 2012, Sajeewa Pemasinghe wrote:
> >>
> >> I am trying to install Amber12. I am trying to install it first serial
> and
> >> then parallel.
> >>
> >> So I am typing following commands in the amber12 directory
> >>
> >> ./configure pgi>& config_serial.log &
> >>
> >> Here is my config_serial.log
> >>
> >> Checking for updates...
> >> AmberTools13 is up to date
> >> Amber13 is up to date
> >
> > This is quite odd. Messages above are only found in the developers'
> version,
> > not in any of the released code. How did you obtain your copy of the
> code?
> >
> >> pgf90-Fatal-/wsu/usr/pgi/linux86-64_2.6/12.6/bin/pgf901 TERMINATED by
> >> signal 11
> >
> > Signal 11 problems often (usually?) come from problems in your temp
> directory;
> > see http://www.pgroup.com/support/compile.htm#comp_segs1. This
> probably(!?)
> > has nothing to do with Amber.
> >
> > (Note I got that site by just typing "pgf90 signal 11" into Google.)
> >
> > ...dac
> >
> >
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>
>
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Received on Mon Oct 08 2012 - 18:00:03 PDT
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