Jason:
After running the ./patch_Amber.py --patch-level I get.
Latest patch applied to AmberTools12: 24Latest patch applied to Amber12: 11
What I get during patch application is this:
Applying AmberTools12 patches Moving bugfix.1 to AmberTools_Applied_PatchesCreating file /Volumes/Kimahri/AMBER/amber12/AmberTools/test/cpptraj/Test_Closest/closestmols.dat Moving bugfix.2 to AmberTools_Applied_PatchesThis patch patches patch_amber.py. I will quit after this patch so the rest may be applied with the updated version. Moving bugfix.3 to AmberTools_Applied_PatchesERROR: the X11 extensions headers are not in the usual location! To search for them try the command: locate X11/extensions On new Fedora OSes install libXext-devel On RedHat OSes install libXext-devel To build Amber without XLEaP, re-run configure with '-no-X11: ./configure -no-X11 intelConfigure failed due to the errors above!
I get no other warning.
After reading your last message I ran:
./patch_amber.py --update-tree
several times just to be sure but I ended up having the same error:
icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xTank.o xTank.cxTank.c(62): catastrophic error: cannot open source file "X11/IntrinsicP.h" #include <X11/IntrinsicP.h>
Any suggestions?
> Message: 8
> Date: Mon, 1 Oct 2012 19:14:17 -0400
> From: Jason Swails <jason.swails.gmail.com>
> Subject: Re: [AMBER] X11 problems on Mac OS X 10.8
> To: AMBER Mailing List <amber.ambermd.org>
> Message-ID:
> <CAEk9e3qCh554Po31b7-EmNBV44Kc7esT2kB3q-Rg+rbF=3SCMg.mail.gmail.com>
> Content-Type: text/plain; charset=ISO-8859-1
>
> What does
>
> ./patch_amber.py --patch-level
>
> return when you are in AMBERHOME?
>
> Particularly, bugfix.23 for AmberTools 12 fixes the configure script to
> work with Mac OS X 10.8 so xleap builds (in addition to updating configure
> for the GPU update). Make sure all updates are applied.
>
> HTH,
> Jason
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Received on Tue Oct 02 2012 - 15:30:02 PDT
