I already have AmberTools12 on a Debian amd64 server. Now I wanted to
have it also on my vintage desktop Debian i386.
At ./configure gnu, problems arose in applying patches:
root.deb32:/usr/local/amber12# ./configure gnu
Checking for updates...
AmberTools12 has 24 unapplied patches: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10,
11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24
There are patches available. Do you want to apply them now? [y/n]
(Recommended Y)
y
Determining patches to download for AmberTools12
Downloading bugfix.1
Downloading bugfix.2
Downloading bugfix.3
Downloading bugfix.4
Downloading bugfix.5
Downloading bugfix.6
Downloading bugfix.7
Downloading bugfix.8
Downloading bugfix.9
Downloading bugfix.10
Downloading bugfix.11
Downloading bugfix.12
Downloading bugfix.13
Downloading bugfix.14
Downloading bugfix.15
Downloading bugfix.16
Downloading bugfix.17
Downloading bugfix.18
Downloading bugfix.19
Downloading bugfix.20
Downloading bugfix.21
Downloading bugfix.22
Downloading bugfix.23
Downloading bugfix.24
Applying AmberTools12 patches
Error or warning during patching process for
.patches/AmberTools_Unapplied_Patches/bugfix.1:
Reversed (or previously applied) patch detected! Skipping patch.
6 out of 6 hunks ignored -- saving rejects to file
AmberTools/src/parmed/ParmedTools/ParmedActions.py.rej
Reversed (or previously applied) patch detected! Skipping patch.
1 out of 1 hunk ignored -- saving rejects to file
AmberTools/src/parmed/ParmedTools/exceptions.py.rej
Reversed (or previously applied) patch detected! Skipping patch.
1 out of 1 hunk ignored -- saving rejects to file
AmberTools/src/parmed/ParmedTools/gui/_guiactions.py.rej
Reversed (or previously applied) patch detected! Skipping patch.
2 out of 2 hunks ignored -- saving rejects to file
AmberTools/src/parmed/chemistry/amber/mask.py.rej
Reversed (or previously applied) patch detected! Skipping patch.
1 out of 1 hunk ignored -- saving rejects to file
AmberTools/src/parmed/chemistry/amber/readparm.py.rej
Reversed (or previously applied) patch detected! Skipping patch.
1 out of 1 hunk ignored -- saving rejects to file
AmberTools/src/parmed/chemistry/exceptions.py.rej
Automatic patching failed! Check the errors before re-configuring
root.deb32:/usr/local/amber12#
While its was not clear to me (from examining the indicated files) why
the problem, does that mean that also bugfixes 2-24 were skipped?
thanks
francesco pietra
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Received on Fri Sep 28 2012 - 03:00:02 PDT
