Hi,
In the future it's a better practice to ask all of your questions in
the email rather than putting them in an attachment. This makes it
easier to follow for anyone who might come across this thread in the
future.
Your attachment shows the RDF generated from the command:
'radial rdf 0.05 12 :1-229 :WAT closet density'
which calculates the RDF of all atoms in residues 1 to 229 to all
atoms in all residues named WAT. In your graph you have two peaks (one
at about 1.8 Ang., one at about 3 Ang.) which seems reasonable to me
(one is from water hydrogen atoms and the other from water oxygen
atoms).
-Dan
On Thu, Sep 13, 2012 at 9:23 PM, Yanyan ZHU <zhuyanzily.gmail.com> wrote:
> Dear all:
> I have received your reply and very grateful for your help. However,
> I have some other puzzles that I have sent as enclosure. I am looking for
> your reply .Give my best wishs to you.
>
>
> 2012.09.14
>
>
>
> yanyan,zhu
>
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--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-9119 (Fax)
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Received on Fri Sep 14 2012 - 16:00:03 PDT
