[AMBER] PCA analysis

From: Sangita Kachhap <sangita.imtech.res.in>
Date: Thu, 6 Sep 2012 21:23:14 +0530 (IST)

Hello all
I want to do PCA analysis for residue - residue fulctuation of alpha carbon.
I go through the Correlation and fluctuation facility in AmberTool and also the
amber mailing list. There is matrix command to generate covariance matrix but it
generate covariance matrix byatom.

How I can gerenate residue - residue fulctuation map of alpha carbon using
covvariance matrix?


With regards


Sangita Kachhap
SRF
BIC,IMTECH
CHANDIGARH

______________________________________________________________________
सूक्ष्मजीव प्रौद्योगिकी संस्थान (वैज्ञानिक औद्योगिक अनुसंधान परिषद)
Institute of Microbial Technology (A CONSTITUENT ESTABLISHMENT OF CSIR)
सैक्टर 39 ए, चण्डीगढ़ / Sector 39-A, Chandigarh
पिन कोड/PIN CODE :160036
दूरभाष/EPABX :0172 6665 201-202

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Received on Thu Sep 06 2012 - 09:00:03 PDT
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