[AMBER] Adding a ROH to a oligosaccharide

From: Pedro Swagger <pedrito.swagger.gmail.com>
Date: Wed, 5 Sep 2012 15:44:56 -0400

Dear all,

I want to add ROH to an oligosaccharide that is not attached to any part of
a protein. However I dont know how to do it. I try the following but it
adds the ROH but very far from the oligosaccharide, Could you please help
me?

my oligosaccharide is store in a pdb but it does not have ROH.

Thanks for your help

####################################
source leaprc.ff03.r1
source leaprc.GLYCAM_06h


X = loadpdb glycam.pdb

N = sequence { ROH X }

savepdb N new.pdb 



-- 
Pedro
Saludos
Departamento de Física,
Facultad de Ciencias,
Universidad de Chile
Las Palmeras 3425, Ñuñoa, Santiago, Chile
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Received on Wed Sep 05 2012 - 13:00:08 PDT
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