Dear Amber Users,
I want to use igb=7 in the input file as it better describe the real
situation more accurately and is nearly equivalent to the explicit solvent
model. But it is mentioned in the Amber 9 user Manual that this model is
not recommended for systems involving nucleic acids.
Now, my system is a carbon nanotube system functionalized with nucleic acid
base, e.g., adenine. Can I use the igb=7 gb model?
Regards,
jit
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Received on Tue Sep 04 2012 - 09:00:05 PDT
