[AMBER] forcefield for dipeptide

From: Mary Varughese <maryvj1985.gmail.com>
Date: Tue, 4 Sep 2012 14:10:04 +0530

Sir,
I have to do a simulation study on nucleic acid-dipeptide complex. Can i
use a combination ff99bsc0 and ff99SB. I thought as i am using standard
aminoacid dipeptide as the ligand i dont have to do any QM charge
derivation procedure. ff99SB would take care of it. Am Icorrect?

Thanking you

-- 
Mary Varughese
Research Scholar
School of Pure and Applied Physics
Mahatma Gandhi University
India
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Received on Tue Sep 04 2012 - 02:00:02 PDT