Mr. Dac
I also downloaded AmberTools12(using the "download
AmberTools" link at
http://ambermd.org) . It is AmberTools12.tar.bz2.
Then I proceed like following:
$tar xvjf AmberTools12.tar.bz2.
$cd amber12
$export AMBERHOME =/home/sanjib/
$./patch_amber.py --update-tree
Error: No internet access!
But I have internet access. In webpage
http://jswails.wikidot.com/installing-amber12-and-ambertools-12 I have
seen that patch_locs in patch_amber.py should be changed from
patch_locs = ['
http://ambermd.org/bugfixes/AmberTools/12.0/',
'
http://ambermd.org/bugfixes/12.0/']
to
patch_locs = ['file:///path/to/mirror/folder/',
'file:///path/to/mirror/folder/']
Here I can't understand what should I do? Please help.
Sanjib
On 8/30/12, David A Case <case.biomaps.rutgers.edu> wrote:
> On Thu, Aug 30, 2012, Sanjib Paul wrote:
>
>> I use AMBER 9. Now, I want to install
>> tools of AMBER11. I downloaded it and tried to follow the instructions
>> given in webpage. I downloaded the file bugfix.all. Then as given in
>> instruction I gave command
>> $ patch -p0 -N < bugfix.all
>> Here one line is coming
>> File to patch:
>> I can't understand what file should I give here. Once I gave file
>> 'bugfix.all'. But again that line is coming,
>> File to patch:
>> What should I do now? Please help..
>
> We need more details. First, what exactly did you download? You really
> should download AmberTools12 (using the "download AmberTools" link at
> http://ambermd.org). We don't offer earlier versions any more, and it's
> hard
> to tell what you really mean by "tools of Amber11", or what webpage you are
> using to find instructions. (Note that one of the improvements in the
> current
> release is that bugfixes and updates are made automatically, and users
> don't
> have to do that by hand.)
>
> ....dac
>
>
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> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Thu Aug 30 2012 - 06:30:03 PDT
