'restraintmask' uses the Amber Mask syntax for atom selections. There is a
section in the Amber 12 manual (Appendix C) about the mask syntax.
HTH,
Jason
On Sun, Jul 22, 2012 at 2:10 AM, pancham lal gupta
<panchi2panchi.gmail.com>wrote:
> Sir,
>
> In manual, they describe for range of amino-acid not for particular
> amino-acid.
> i want to restrain particular amino acid. I have searched .....but didn't
> get.
>
> please help me
>
>
> Pancham lal gupta
> IIT delhi
>
> On Sun, Jul 22, 2012 at 8:44 AM, vishal3990.gmail.com
> <vishal3990.gmail.com>wrote:
>
> > Search for amber tutorial MD of DNA duplex . in the explicit solvent
> > section you can find example of energy minimisation with restraint
> >
> > -----Original Message-----
> > *From: *pancham lal gupta **
> > *Sent: *Sat Jul 21 17:31:19 UTC 2012
> > *To: *amber.ambermd.org
> > *Subject: *[AMBER] Restrained minimization
> >
> > Hi....
> >
> > How to fix or restrain particular amino acid during energy energy
> > minimization in AMBER.
> > please help me ....
> >
> >
> > Pancham lal gupta
> > IIT Delhi, India
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Sun Jul 22 2012 - 11:30:03 PDT
