Re: [AMBER] error with ambertools12 and amber10 installation

From: David A Case <case.biomaps.rutgers.edu>
Date: Fri, 20 Jul 2012 08:29:29 -0400

On Fri, Jul 20, 2012, vaibhav dixit wrote:

> I have made the following change in the Makeinstall_at file
> ----
> # nab, leap, and sleap:
> (cd cifparse && make install )
> # (cd nab && make install )
>
> (cd nss && make install )
> --------
> but there is the following error

Well, doing things like hacking makefiles is indeed likely to lead to problems.

> make[1]: /home/gncp/Documents/GNCP/MD/amber10/bin/nab: Command not found

As the error message indicates, nss depends on nab, so it doesn't make sense
to skip nab and still try to compile nss.

> Please suggest how I can try to fix this.

I made two suggestions in my earlier email; not sure why you didn't try them
out:

(1)
> > The fix is here:
> > http://archive.ambermd.org/201201/0318.html
> >

(2)
> > upgrade to the current codes if at all possible.

...dac


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Received on Fri Jul 20 2012 - 05:30:03 PDT
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