[AMBER] installing amber12

From: huseyin istanbullu <istanbulluh.gmail.com>
Date: Wed, 11 Jul 2012 11:57:42 +0300

hi
i try to install amber12 with http://jswails.wikidot.com tutorials.

when i type "./configure gnu" in terminal, the message is:

"AmberTools12 has 14 unapplied patches: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11,
12, 13, 14
Amber12 has 7 unapplied patches: 1, 2, 3, 4, 5, 6, 7
There are patches available. Do you want to apply them now? "

Y and then

"

Applying AmberTools12 patches

Error or warning during patching process for
.patches/AmberTools_Unapplied_Patches/bugfix.1:

Reversed (or previously applied) patch detected! Skipping patch.

6 out of 6 hunks ignored -- saving rejects to file
AmberTools/src/parmed/ParmedTools/ParmedActions.py.rej

Reversed (or previously applied) patch detected! Skipping patch.

1 out of 1 hunk ignored -- saving rejects to file
AmberTools/src/parmed/ParmedTools/exceptions.py.rej

Reversed (or previously applied) patch detected! Skipping patch.

1 out of 1 hunk ignored -- saving rejects to file
AmberTools/src/parmed/ParmedTools/gui/_guiactions.py.rej

Reversed (or previously applied) patch detected! Skipping patch.

2 out of 2 hunks ignored -- saving rejects to file
AmberTools/src/parmed/chemistry/amber/mask.py.rej

Reversed (or previously applied) patch detected! Skipping patch.

1 out of 1 hunk ignored -- saving rejects to file
AmberTools/src/parmed/chemistry/amber/readparm.py.rej

Reversed (or previously applied) patch detected! Skipping patch.

1 out of 1 hunk ignored -- saving rejects to file
AmberTools/src/parmed/chemistry/exceptions.py.rej
"

how can i fix that and install amber12?

thanks a lot

huseyin istanbullu
ege university faculty of pharmacy
dept. of medicinal chemistry
Izmir / Turkey


-- 
verba volant, scripta manent
http://serrahuseyin.blogspot.com
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Received on Wed Jul 11 2012 - 02:00:02 PDT
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