Re: [AMBER] cpptraj-secstruct N-terminal proline

From: David A. Case <case.biomaps.rutgers.edu>
Date: Tue, 10 Jul 2012 17:55:22 -0400

On Tue, Jul 10, 2012, colvin wrote:

> What is the Amber standard for backbone amide hydrogens for
> N-terminal proline?

You can use the "desc" command in LEaP to get all of the atom names in
NPRO. (Amide hydrogens are H2 and H3).

Note also that this is not the "Amber standard", but is rather the PDB and
IUPAC standard.

....dac


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Received on Tue Jul 10 2012 - 15:00:02 PDT
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