I strongly recommend updating to AmberTools 12, since cpptraj is a new (and
quickly-evolving) code, although I don't know that it will fix your issue.
HTH,
Jason
On Wed, Jun 27, 2012 at 2:45 AM, kurisaki <
kurisaki.ncube.human.nagoya-u.ac.jp> wrote:
> PS.
>
> I use AmberTools 1.5
>
> Yours sincerely
>
> IK
>
>
> -----Original Message-----
> From: kurisaki
> [mailto:kurisaki.ncube.human.nagoya-u.ac
> .jp]
> Sent: Wednesday, June 27, 2012 3:37 PM
> To: 'AMBER Mailing List'
> Subject: [AMBER] APPEND option does not
> work in TRAJOUT of CPPTRAJ
>
> Dear Amber developers and users,
>
> I would like to append trajectory
> snapshots into the other one and
> used APPEND option in TRAJOUT of
> CPPTRAJ.
>
> But the following error messages
> appears:
>
> INPUT: Reading Input from file check.sh
> [trajin original.mdcrd 1 10 1]
> [trajout append.mdcrd append
> onlyframes 1-5 ]
> Saving frames 1 2 3 4 5
> [trajout appedn.mdcrd append
> onlyframes 6-10 ]
> ERROR: Setting up file for trajectory
> appedn.mdcrd
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> ^^^^^^^^^^
>
> Here, I tried to append 10 snapshots in
> original.mdcrd into append.mdcrd.
> But APPEND option does not work although
> it locates at the place the manual
> refers.
>
> I am most grateful if you tell me the
> correct usage of this option.
>
> Yours sincerely,
>
>
> Ikuo Kurisaki
>
>
>
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>
>
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>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Wed Jun 27 2012 - 04:30:02 PDT
