Re: [AMBER] Can we change BUFFER_SIZE (1024) ?

From: kurisaki <kurisaki.ncube.human.nagoya-u.ac.jp>
Date: Wed, 27 Jun 2012 11:42:04 +0900

Thank you for kind advice, Jason.
That is more convenient for me.

Yours sincerely,

                                IK


-----Original Message-----
From: Jason Swails
[mailto:jason.swails.gmail.com]
Sent: Tuesday, June 26, 2012 11:14 PM
To: AMBER Mailing List
Subject: Re: [AMBER] Can we change
BUFFER_SIZE (1024) ?

$ grep "define BUFFER_SIZE" *
CpptrajFile.h:#define BUFFER_SIZE 1024
ptraj_common.h:#define BUFFER_SIZE 1024

Note that you can also use several
"outtraj" commands at the end of your
cpptraj script and split up the
"frameonly" list into manageable chunks.

HTH,
Jason

On Tue, Jun 26, 2012 at 3:42 AM,
kurisaki <
kurisaki.ncube.human.nagoya-u.ac.jp>
wrote:

> Dear Amber developer and users,
>
>
>
> I am now trying TRAJOUT with FRAMEONLY
option in CPPTRAJ.
>
> However, I often encounter the error;
>
> Error: Input line is greater than
BUFFER_SIZE (1024).
>
> This is due to a large number of
frames like
>
>
>
11473,11477,11480,11524,11526,11529,1205
2,12083,12117-12118,12124-1212
> 5,1212
> 7,13010,13020-13021...
>
>
>
> I would like to change the BUFFER_SIZE
valuable so I can write down
> larger snapshots at a time
>
> but I do not know what file contain
it.
>
>
>
> I am most grateful if you tell the
file.
>
>
>
> Yours sincerely,
>
>
>
>
Ikuo KURISAKI
>
>
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>
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--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Tue Jun 26 2012 - 20:00:02 PDT
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