Re: [AMBER] force field library for protonated cytosine

From: case <case.biomaps.rutgers.edu>
Date: Mon, 25 Jun 2012 18:12:37 -0400

On Tue, Jun 26, 2012, Asmita Gupta wrote:
> I used that command too...here is the output of "desc"
>
> RESIDUE name: PC
> RESIDUE sequence number: 1

You originally used c.24.N24, which purports to refer to an atom named "N24"
in residue 24. You probably want c.1.N24, looking for atom N24 in residue
*1*.

...dac

> > On Mon, Jun 25, 2012, Asmita Gupta wrote:
> > >
> > > bond c.24.N24 c.25.H25
> > > bond: Argument #1 is type String must be of type: [atom]
> >

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Received on Mon Jun 25 2012 - 15:30:03 PDT
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