i'm now downloading the app store version of xcode. do you think i need to
uninstall and reinstall macports again?
On Fri, Jun 8, 2012 at 8:05 AM, Jonathan Gough
<jonathan.d.gough.gmail.com>wrote:
> thats too funny...
>
> i have
>
> which gcc
> /usr/bin/gcc
>
> # MacPorts Installer addition on 2011-12-17_at_20:09:57: adding an
> appropriate PATH variable for use with MacPorts.
> export PATH=/opt/local/bin:/opt/local/sbin:$PATH
> # Finished adapting your PATH environment variable for use with MacPorts.
> export AMBERHOME=/Users/jonathangough/amber12
>
> On Fri, Jun 8, 2012 at 8:01 AM, Jason Swails <jason.swails.gmail.com>wrote:
>
>> On Fri, Jun 8, 2012 at 7:56 AM, Jonathan Gough
>> <jonathan.d.gough.gmail.com>wrote:
>>
>> > I did a FULL uninstall of Xcode and macports (including wiping
>> /opt/local).
>> > Used the shell script to clear out xcode, deleted the app files.
>> macports
>> > I followed all the instructions including removing all other files. (
>> > http://guide.macports.org/#installing.macports.uninstalling)
>> >
>> > Installed 4.3.1 and the lion macports pkg.
>> >
>> > installed all the ports needed for amber (sudo port install gcc44 gcc46
>> > gcc_select mpich2 +gcc44 python27 py27-numpy python_select molden +gcc44
>> > grace gnuplot bkchem chemtool netpbm pymol)
>> >
>> > ./configure gnu
>> >
>> >
>> > gives me the following error.
>> >
>> > he version is 4.2.1
>> >
>> > ERROR: RISM and PBSA FFT solver require version 4.3 or higher of the GNU
>> > compiler.
>> >
>> > Please re-run configure with the '-nofftw3' flag to use this
>> > compiler:
>> >
>> > ./configure -nofftw3 gnu
>> >
>> > Configure failed due to the errors above!
>> >
>> > i did the switch to mp-gcc46
>> >
>> > port select --list gcc
>> >
>> > Available versions for gcc:
>> >
>> > gcc42
>> >
>> > llvm-gcc42
>> >
>> > mp-gcc44
>> >
>> > mp-gcc45
>> >
>> > mp-gcc46 (active)
>> >
>> > none
>> >
>> > but gcc -v gives me
>> >
>> > gcc version 4.2.1 (Based on Apple Inc. build 5658) (LLVM build
>> 2336.9.00)
>> >
>> > any thoughts on how to proceed next?
>> >
>>
>> Type "which gcc" and make sure your PATH is set up correctly. In your
>> ~/.bash_profile or ~/.profile you should see lines like this:
>>
>> # MacPorts Installer addition on 2012-04-22_at_18:23:26: adding an
>> appropriate PATH variable for use with MacPorts.
>> export PATH=/opt/local/bin:/opt/local/sbin:$PATH
>> # Finished adapting your PATH environment variable for use with MacPorts.
>>
>> For me it's in my ~/.profile.
>>
>> On the bright side (downside since you went through all this already?), I
>> just got a fix working for Xcode 4.3.2 that solves the issues on my
>> machine
>> (literally just now within the last 10 minutes).
>>
>> Since there were so many threads reporting the issue (i.e., more than 1
>> :))
>> I'm going to announce separately.
>>
>> All the best,
>> Jason
>>
>> --
>> Jason M. Swails
>> Quantum Theory Project,
>> University of Florida
>> Ph.D. Candidate
>> 352-392-4032
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
>
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Received on Fri Jun 08 2012 - 06:00:05 PDT
