I did a FULL uninstall of Xcode and macports (including wiping /opt/local).
Used the shell script to clear out xcode, deleted the app files. macports
I followed all the instructions including removing all other files. (
http://guide.macports.org/#installing.macports.uninstalling)
Installed 4.3.1 and the lion macports pkg.
installed all the ports needed for amber (sudo port install gcc44 gcc46
gcc_select mpich2 +gcc44 python27 py27-numpy python_select molden +gcc44
grace gnuplot bkchem chemtool netpbm pymol)
./configure gnu
gives me the following error.
he version is 4.2.1
ERROR: RISM and PBSA FFT solver require version 4.3 or higher of the GNU
compiler.
Please re-run configure with the '-nofftw3' flag to use this
compiler:
./configure -nofftw3 gnu
Configure failed due to the errors above!
i did the switch to mp-gcc46
port select --list gcc
Available versions for gcc:
gcc42
llvm-gcc42
mp-gcc44
mp-gcc45
mp-gcc46 (active)
none
but gcc -v gives me
gcc version 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2336.9.00)
any thoughts on how to proceed next?
On Thu, Jun 7, 2012 at 3:04 PM, Jason Swails <jason.swails.gmail.com> wrote:
> If I recall correctly, 4.3.1 was the latest version I did NOT have problems
> building Amber with.
>
> I would suggest wiping out your entire /opt/local directory and rebuilding
> your MacPorts installation with the new Xcode afterwards, since going in
> the *reverse* order (that is, upgrading my Xcode to reproduce errors), I
> was not able to reproduce any errors until I did that.
>
> HTH,
> Jason
>
> On Thu, Jun 7, 2012 at 2:38 PM, Jonathan Gough
> <jonathan.d.gough.gmail.com>wrote:
>
> > Jason,
> >
> > You mentioned using an older version of x-code that didn't have the
> > compilation problems that others are experiencing. I'd like to downgrade
> > my version to one that works (so I can play with amber on my laptop too).
> >
> > For the record I have 4.3.2 installed.
> >
> > Thanks,
> > Jonathan
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Fri Jun 08 2012 - 05:00:03 PDT
