Dear Amber Users,
I am trying to run Replica exchange MD simulation implicitly. During the
equilibration step and at higher temperatures, the structure of my protein
becomes distorted. I have given the chirality restraints on the protein
backbone. I wanted to know whether structural distortions at higher
temperatures in normal or do I need to modify/add some parameters?
Thanks,
Soumya
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Received on Thu Jun 07 2012 - 21:00:02 PDT
