On Tue, Jun 05, 2012, Romelia Salomon wrote:
>
> I have couple questions about NAB.
>
> 1) I am trying to create a nucleotide sequence in a random configuration,
> I am using link_na but I get the following error
>
> Residue g not in library rna.amber94.rlb.
This sounds like an old version of the code. Please upgrade to AmberTools12,
if you have not already done so. If that doesn't help, you should post the
program that has the call to link_na().
>
> I also tried the example that comes in the manual "// Program 8 - create a
> pseudoknot using distance geometry" as it uses similar calls to the one I
> have and I still got the same error.
Program 8 works for me (again in AmberTools12).
>
> 2) I need to substitute a nucleotide from a sequence, what would be the
> best way to do it with NAB? Is
I think we need more context here.
....dac
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Received on Tue Jun 05 2012 - 11:00:04 PDT
