I have a pdb file comprised of Methylsalicylate and Polyethyleneglycol (PEG) 4000. Can I perform molecular dynamics on this system as there is no protein component? I know I can use Antechamber to devlop the prmtop files for each molecule separately, however- the "complex" will not have a protein component and I'm not sure this will work.
If anyone has a suggestion to how to model this problem on another platform, I'd be also grateful.
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Received on Mon Jun 04 2012 - 22:00:03 PDT
