Thanks again Ross. That did it! whew.... I'm running make test now.
If there are too many more problems, I'll be doing the centos install. Not
thrilled with Ubuntu right now. I'm already downloading the dvd's.
On Wed, May 30, 2012 at 2:59 PM, Ross Walker <ross.rosswalker.co.uk> wrote:
> Hi Jonathan,
>
> This might not be of much help to you but my advice is to stay well clear
> of
> Ubuntu. I have nothing but pain and anguish with it. I would suggest using
> something more stable and less hemorrhaging edge such as Redhat EL6 (Or the
> CentOS free version). I can promise you that this will work without all the
> pain that Ubuntu causes.
>
> With regards to what Dave is suggesting...
>
> PMEMD_CU_LIBS=-L$(CUDA_HOME)/lib64 -L$(CUDA_HOME)/lib -lcurand -lcufft
> -lcudart ./cuda/cuda.a
>
> Becomes:
>
> PMEMD_CU_LIBS=./cuda/cuda.a -L$(CUDA_HOME)/lib64 -L$(CUDA_HOME)/lib
> -lcurand
> -lcufft
> -lcudart
>
> Nothing else in the config.h file changes.
>
> See if that helps.
>
> All the best
> Ross
>
> > -----Original Message-----
> > From: Jonathan Gough [mailto:jonathan.d.gough.gmail.com]
> > Sent: Wednesday, May 30, 2012 11:44 AM
> > To: AMBER Mailing List
> > Subject: Re: [AMBER] Trouble compiling cuda, need help.
> >
> > In case this helps, here is a thumbnail sketch of what I have done.
> >
> > I am trying to build a system to do md calculations. I picked up a
> > tesla
> > (1060) card and decided to install it in a vanilla machine and (i7-
> > 870)12
> > GB RAM. I ran into challenging issues.
> >
> >
> > 1 - accidentally install the 32-bit system instead of the 64bit
> >
> > 2 - Clean install of 64-bit system. before installing the nvidia
> > drivers
> > and packages necessary for amber i auto-updated. This automatically
> > installed some nvidia drivers of a previous version (295.40). when i
> > installed the developers drivers (295.41). there was a version conflict
> > and
> > I lost all x-terminal access (GUI) after a few hours of trying to
> > resuscitate I gave up.
> >
> > 3 - So I did another clean 64-bit install. started with the necessary
> > amber packages and the did the nvidia stuff.
> >
> > I found that using make -k was really helpful in terms of getting the
> > sdk
> > to install the trouble shooting app that amber guru's ask that you have
> > installed (deviceQuery).
> >
> >
> >
> > I successfully Finished serial and parallel installation and tests. No
> > problems.
> >
> >
> > cuda install - as I posted before. No good.
> >
> >
> > I finally decided to update the packages on the system since I seemed
> > to
> > have hit a wall. updates via the package manager, crushed my system.
> > nvidia cards war no longer found. i installed synaptic package manager
> > and
> > searched for nvidia. I found what looked to be the most recent dev
> > version
> > and installed it. that rescued the display and the cards were once
> > again
> > recognized.
> >
> > - this updated the driver version to 295.49.
> >
> >
> > cuda install again failed at the same place.
> >
> > I tried david case's suggestion but. no dice.
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
>
> _______________________________________________
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>
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Received on Wed May 30 2012 - 12:30:03 PDT
