In the Graphical Representations window there is a tab that says
"periodic". It is next to the tabs "Draw Style", "Selections",
"Trajectory", and then "Periodic" in the middle of that Graphical Rep.
window.
HTH,
Jason
There's an option to view +X, +Y, +Z, -X, etc.
On Wed, May 23, 2012 at 9:45 AM, Ben Ahmady <uccabha.ucl.ac.uk> wrote:
> Dear AMBER Users & Developers
>
> I'm trying to run a micelle within AMBER and would like to know whether
> within the `Graphical Representations' menu of VMD it's possible to
> visualise periodic images with '+X', '-X', '+Y' and so on, as I have
> done this in the past with other software inputs/outputs but never with
> those of AMBER. Currently I'm not seeing anything but I've loaded a
> prmtop file into the program and have added a rst file to it,
> identifying it as an ' AMBER 7 restart' file. The 'inpcrd' coordinates I
> generated had box info (added via 'setbox' with the 'vdw' option in
> Leap) and these have been recognised by VMD: "This restartcrd file has
> box info".
>
> Any help would be greatly appreciated.
>
>
> Best regards
>
> Ben Ahmady
>
>
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>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Tue May 29 2012 - 10:30:02 PDT
