Dear Amber experts,
My apology if the answer for my question is obvious. However, I can not
find it by myself.
Best
Hai Nguyen
On Tue, May 15, 2012 at 1:36 AM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> Dear Amber experts,
>
> I want to build a series of B form RNA to perform MD simulations showing
> the conversion from B to A form. However, I can not find a NAB input to
> build B form RNA (although I can easily build A and B forms for DNA and A
> form for RNA by a simple NAB input). I've read the Ambertool manual but
> can't find an easy way to do so (or I may accidentally skip that section).
> For a single B-RNA structure, I often use this server
> http://structure.usc.edu/make-na/server.html. However, it's really
> laborious to build few tens of structures in that way. I really appreciate
> if you can give me any suggestion. Thanks.
>
> Best
> Hai Nguyen
>
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Received on Sat May 19 2012 - 09:30:03 PDT
