Hi Albert,
We've filed a bug report for leap and as soon as someone can take a good look at it, they will.
The official workaround for this problem is to save a prmtop and mdcrd file from LEaP (saveAmberParam) then use ambpdb to save a pdb file (see the manual). ambpdb correctly formats the pdb files for lipid11. This is what we've been doing for a correct pdb.
Thanks,
Ben
On May 18, 2012, at 11:43, "Albert" <mailmd2011.gmail.com> wrote:
> hello:
>
> Many users found that there is a bug in Amber 12's tleap: there are
> incorrect TER for saving lipids PDB.....I am wondering, is there any
> bugfix ready for this problem?
>
> thx
>
> Albert
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Received on Fri May 18 2012 - 17:30:03 PDT
