On Fri, May 11, 2012, Asma Abro 28-FBAS/MSBI/F09 wrote:
>
> I have a problem regarding antechamber when I run this command:
>
> antechamber -i minlig_h.pdb -fi pdb -o lig.prepin -fo prepi -c bcc -s 2
>
> I get the following error:
>
> Running: /home/asma/AAData/AMBER/amber10//bin/sqm -O -i sqm.in -o sqm.out
> sh: /home/asma/AAData/AMBER/amber10//bin/sqm: No such file or directory
You don't have the sqm program installed, which makes sense since I don't
think sqm was available in Amber10. It looks like your $AMBERHOME environment
variable is wrong(?). It should point to a directory tree headed by "amber12"
(for the current release), or maybe "amber11" if you are using an older
version of AmberTools. See if that helps.
...dac
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Received on Fri May 11 2012 - 05:30:03 PDT
