[AMBER] Problem regarding antechamber

From: Asma Abro 28-FBAS/MSBI/F09 <asma.msbi28.iiu.edu.pk>
Date: Fri, 11 May 2012 13:13:48 +0500

Hi all,

I have a problem regarding antechamber when I run this command:

antechamber -i minlig_h.pdb -fi pdb -o lig.prepin -fo prepi -c bcc -s 2

I get the following error:

Running: /home/asma/AAData/AMBER/amber10//bin/sqm -O -i sqm.in -o sqm.out
sh: /home/asma/AAData/AMBER/amber10//bin/sqm: No such file or directory
Error: cannot run "/home/asma/AAData/AMBER/amber10//bin/sqm -O -i sqm.in -o
sqm.out" of bcc() in charge.c properly, exit

Can anyone help me regarding this?
I am trying to do Protein-ligand complex simulation.
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Received on Fri May 11 2012 - 01:30:04 PDT
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