Re: [AMBER] Umbrella sampling using GPU acceleration

From: Ross Walker <ross.rosswalker.co.uk>
Date: Wed, 2 May 2012 06:28:35 -0700

Hi Massimiliano,

> I am wondering if there is any way to perform umbrella sampling
> calculations
> using the GPU computing in Amber11, as the option "nmropt=1" is
> not allowed yet.
>
> Thank you in advance.

NMROPT=1 is supported with the GPU code in AMBER 12 which was released last
month. You can find details here:

http://ambermd.org/#Amber12

I apologize that the GPU page (http://ambermd.org/gpus/) has not been
updated for AMBER 12 yet. I will update it shortly once I get through my
current TODO list.

All the best
Ross

/\
\/
|\oss Walker

---------------------------------------------------------
| Assistant Research Professor |
| San Diego Supercomputer Center |
| Adjunct Assistant Professor |
| Dept. of Chemistry and Biochemistry |
| University of California San Diego |
| NVIDIA Fellow |
| http://www.rosswalker.co.uk | http://www.wmd-lab.org/ |
| Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
---------------------------------------------------------

Note: Electronic Mail is not secure, has no guarantee of delivery, may not
be read every day, and should not be used for urgent or sensitive issues.





_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed May 02 2012 - 06:30:02 PDT
Custom Search