Re: [AMBER] error in decomposition analysis using ambertools 1.5

From: manikanthan bhavaraju <>
Date: Mon, 30 Apr 2012 20:13:24 -0500


I have added the debug_printlevel=2 to the general section. It is
showing the following error:

Reading command-line arguments and input files...
Loading and checking parameter files for compatibility...
sander found! Using sander
mmpbsa_py_energy found! Using
cpptraj found! Using /home/srg/mhb75/Download/amber12/bin/cpptraj
Preparing trajectories for simulation...
50 frames were processed by cpptraj for use in calculation.

Beginning GB calculations with None
  File "/home/srg/mhb75/Download/amber12/bin/", line 565, in ?
    external_progs, '_MMPBSA_', normal_system)
  File "/home/srg/mhb75/Download/amber12/bin/MMPBSA_mods/",
line 91, in run_calculations
    if 'mmpbsa_py_energy' in progs['gb']: incrd = '%scomplex.pdb' % prefix
TypeError: iterable argument required
Exiting. All files have been retained.

Is the python 2.4 version on my computer having issues with amber12tools?


AMBER mailing list
Received on Mon Apr 30 2012 - 18:30:03 PDT
Custom Search