Hello:
I've installed intel Parallel studio xe 2011 sp1 update 2 in my Linux
X64 computer and I've compiled the series version of Amber 12
succsufully by command:
./configure intel
I also use make test for the installation and everything goes well.
I am trying to compile with -mpi with command:
make clean
./configure -mpi intel
but it failed with following logs:
gcc: language Host not recognized
gcc: language Host not recognized
gcc: nmode.c: linker input file unused because linking not done
mpicc -c -Dflex -ip -O3 -xHost -DBINTRAJ -DHASGZ -DHASBZ2
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DMPI
-I/home/albert/Desktop/amber12//include -o prm.o prm.c
gcc: language Host not recognized
gcc: language Host not recognized
gcc: prm.c: linker input file unused because linking not done
mpicc -c -Dflex -ip -O3 -xHost -DBINTRAJ -DHASGZ -DHASBZ2
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DMPI
-I/home/albert/Desktop/amber12//include -o rand2.o rand2.c
gcc: language Host not recognized
gcc: language Host not recognized
gcc: rand2.c: linker input file unused because linking not done
mpicc -c -Dflex -ip -O3 -xHost -DBINTRAJ -DHASGZ -DHASBZ2
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DMPI
-I/home/albert/Desktop/amber12//include -o sasad.o sasad.c
gcc: language Host not recognized
gcc: language Host not recognized
gcc: sasad.c: linker input file unused because linking not done
flex -t mm_options.l | sed -e 's/{stdout}/{DONTchangeSTDOUThere}/' -e
's/yy/mmo/g' -e 's/stdout/nabout/' -e 's/DONTchangeSTDOUThere/stdout/' >
lex.mm_options.c
mpicc -c -Dflex -ip -O3 -xHost -DBINTRAJ -DHASGZ -DHASBZ2
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DMPI
-I/home/albert/Desktop/amber12//include -o sff.o sff.c
gcc: language Host not recognized
gcc: language Host not recognized
gcc: sff.c: linker input file unused because linking not done
mpicc -c -Dflex -ip -O3 -xHost -DBINTRAJ -DHASGZ -DHASBZ2
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DMPI
-I/home/albert/Desktop/amber12//include -o time.o time.c
gcc: language Host not recognized
gcc: language Host not recognized
gcc: time.c: linker input file unused because linking not done
mpicc -c -Dflex -ip -O3 -xHost -DBINTRAJ -DHASGZ -DHASBZ2
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DMPI
-I/home/albert/Desktop/amber12//include -o xminC.o xminC.c
gcc: language Host not recognized
gcc: language Host not recognized
gcc: xminC.c: linker input file unused because linking not done
mpicc -c -Dflex -ip -O3 -xHost -DBINTRAJ -DHASGZ -DHASBZ2
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DMPI
-I/home/albert/Desktop/amber12//include -o AmberNetcdf.o AmberNetcdf.c
gcc: language Host not recognized
gcc: language Host not recognized
gcc: AmberNetcdf.c: linker input file unused because linking not done
rm -f /home/albert/Desktop/amber12//lib/libsff_mpi.a
ar rv /home/albert/Desktop/amber12//lib/libsff_mpi.a binpos.o conjgrad.o
lmodC.o memutil.o nblist.o newton.o nmode.o prm.o rand2.o sasad.o sff.o
time.o xminC.o AmberNetcdf.o
ar: creating /home/albert/Desktop/amber12//lib/libsff_mpi.a
ar: binpos.o: No such file or directory
make[2]: *** [libsff_mpi] Error 1
make[2]: Leaving directory `/home/albert/Desktop/amber12/AmberTools/src/sff'
make[1]: *** [parallel] Error 2
make[1]: Leaving directory `/home/albert/Desktop/amber12/AmberTools/src'
make: *** [install] Error 2
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Received on Fri Apr 27 2012 - 13:00:03 PDT
