[AMBER] Problem with molegro file

From: Chris Chris <alpharecept.yahoo.com>
Date: Fri, 27 Apr 2012 09:52:31 -0700 (PDT)

I have an organic molecule (coelenterazine) that was generated in the molegro molecular viewer and then exported as a pdb. I want to put it into antechamber for processing so I can use in AMBER. The problem is that the pdb file looks like it has too many bonds to each atom. Can anyone tell me how to fix this problem.

These bonds are put in by the molegro viewer and not AMBER.

I have attached the file

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Received on Fri Apr 27 2012 - 10:00:02 PDT
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