Hi min,
You are using the wrong file format for the inpcrd file. Inpcrd files are
considered as restart files by VMD so use AMBER restart as the file format.
Take a look at: http://ambermd.org/tutorials/basic/tutorial2/
All the best
Ross
> -----Original Message-----
> From: jun kit [mailto:klorin2002.yahoo.co.uk]
> Sent: Thursday, April 26, 2012 6:52 AM
> To: AMBER List
> Subject: [AMBER] "Spiderweb"
>
> Dear Amber,
>
> i successfully create the PRMTOP file and INPCRD file succesfully based
> on tutorial but on my own ligand without error but when i load the
> PRMTOP and INPCRD into the VMD my molecules become "spiderweb". Will
> the different theory of charge derivation will yield bonding
> information?
>
> Regards
> min
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Apr 26 2012 - 07:00:04 PDT
