Re: [AMBER] Trouble installing AmberTools 1.5 on mac

From: Jason Swails <jason.swails.gmail.com>
Date: Tue, 24 Apr 2012 17:29:38 -0400

This error was brought to our attention a few days ago. We have fixed it,
but have not generated a bug fix for it yet. It should be ready in the
next day or two. The original thread with this error is here:

http://archive.ambermd.org/201204/0607.html

HTH,
Jason

On Tue, Apr 24, 2012 at 2:05 PM, Andrew Ritchie <drew.w.ritchie.gmail.com>wrote:

> Greetings,
> I've been running into a problem installing amber tools on lion 10.7.3.
> I've copy/pasted the warnings and errors I receive upon using make
> install. I'm using './configure -macAccelerate gnu' with a macports gcc46
> compilers. I've followed the installation directions in the manual as well
> as, after running 'make clean', instructions given at
> http://jswails.wikidot.com/installing-amber12-and-ambertools-12 for
> preparing to and then installing amber tools. I've installed updates from
> the ./configure script as well as checked using the python script, with no
> change in final results.
>
> -Andrew Ritchie
> The University of Texas at Austin
>
> /opt/local/bin/ranlib: file: .libs/libtinyxml.a(tinystr.o) has no symbols
> ranlib: file: .libs/libtinyxml.a(tinystr.o) has no symbols
> ranlib: file: /usr/local/amber12/lib/libtinyxml.a(tinystr.o) has no symbols
> dsarpack.f:424.3:
>
> 12 go to 11
> 1
> dsarpack.f:199.15:
>
> go to (12,18) label
> 2
> Warning: Label at (1) is not in the same block as the GOTO statement at (2)
> dsarpack.f:545.3:
>
> 18 go to 17
> 1
> dsarpack.f:199.18:
>
> go to (12,18) label
> 2
> Warning: Label at (1) is not in the same block as the GOTO statement at (2)
> ar: creating archive libarpack.a
> ar: creating archive sys2.a
> psfprm.F90:3208.24:
>
> call deallocate_real(cg,amass)
> 1
> Error: Type mismatch in argument 'a0' at (1); passed REAL(10) to REAL(8)
> psfprm.F90:3231.24:
>
> call deallocate_real(pk,pn,phase)
> 1
> Error: Type mismatch in argument 'a0' at (1); passed REAL(10) to REAL(8)
> psfprm.F90:3249.24:
>
> call deallocate_real(cn1,cn2,rk,req)
> 1
> Error: Type mismatch in argument 'a0' at (1); passed REAL(10) to REAL(8)
> psfprm.F90:3250.24:
>
> call deallocate_real(cn114,cn214)
> 1
> Error: Type mismatch in argument 'a0' at (1); passed REAL(10) to REAL(8)
> psfprm.F90:3251.24:
>
> call deallocate_real(radii,screen)
> 1
> Error: Type mismatch in argument 'a0' at (1); passed REAL(10) to REAL(8)
> psfprm.F90:3252.24:
>
> call deallocate_real(scnb_scale_factor,scee_scale_factor)
> 1
> Error: Type mismatch in argument 'a0' at (1); passed REAL(10) to REAL(8)
> psfprm.F90:2754.21:
>
> call allreal(natom,radii,screen)
> 1
> Error: Type mismatch in argument 'a0' at (1); passed REAL(10) to REAL(8)
> psfprm.F90:1084.25:
>
> call allreal(nfound,pk,pn,phase)
> 1
> Error: Type mismatch in argument 'a0' at (1); passed REAL(10) to REAL(8)
> psfprm.F90:1085.25:
>
> call allreal(nfound,scnb_scale_factor,scee_scale_factor)
> 1
> Error: Type mismatch in argument 'a0' at (1); passed REAL(10) to REAL(8)
> psfprm.F90:273.38:
>
> call allreal(ntypes*(ntypes+1)/2,cn1,cn2,cn114,cn214)
> 1
> Error: Type mismatch in argument 'a0' at (1); passed REAL(10) to REAL(8)
> make[3]: *** [psfprm.o] Error 1
> make[2]: *** [install] Error 2
> make[1]: *** [serial] Error 2
> make: *** [install] Error 2
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>



-- 
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Tue Apr 24 2012 - 15:00:04 PDT
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