Thank you Jason and David.
I don't think I have the order of my steps correct.
Can you verify? I am doing:
------------------------------------------------------------
cd $AMBERHOME
./configure intel
sed -i "s.-xHost.-axAVX,SSE4.2,SSE3 -xSSE2.g" ./config.h
sed -i "s.-xHost.-axAVX,SSE4.2,SSE3 -xSSE2.g" ./AmberTools/src/configure2
make clean uninstall >& make.clean.uninstall.out
make install >& make.install.out
--------------------------------------------------------------------
This sequence, I still get -xHost in some files, so I'm doing something
out of order, I'm sure.
thanks,
Sharon
-----Original Message-----
From: case [mailto:case.biomaps.rutgers.edu]
Sent: Monday, April 23, 2012 8:11 PM
To: AMBER Mailing List
Subject: Re: [AMBER] AMBER12 build on Linux x86_64
On Mon, Apr 23, 2012, Jason Swails wrote:
> True enough -- -xHost is set in the configure script and is passed to
> several packages that use autotools (xblas, fftw3, and most likely NetCDF
> and MTK++ as well). The only way to really avoid this is to strike -xHost
> out of the configure script itself. If you use that sed command on
> $AMBERHOME/AmberTools/src/configure, it will never use -xHost anywhere.
For Amber12, edit $AMBERHOME/AmberTools/src/configure2. As Jason points out,
you need to type "make uninstall" in addition to rerunning the configure
script, in order to ensure that all the third party libraries get re-made
as well.
....dac
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Apr 24 2012 - 08:30:02 PDT
