[AMBER] How to determine the protonation state of phosphorylated residue in a protein?

From: Rajendra Sharma <rajenbiotech.gmail.com>
Date: Fri, 20 Apr 2012 05:38:00 +0530

Dear all,


I have been working on a histidine kinase from E.coli. I need to add a
 phosphate to the histidine. However, I not not sure how to determine the
protonation state of this modified histidine residue in the protein. Could
anyone suggest for programs to do it?

Sincerely,

Rajendras

-- 
Rajendra Sharma
Junior Research Fellow,
Computational Biophysics,
*National Center for Biological Sciences,*
(Tata institute of Fundamental Research)
India.
Mobile No. +91-9950675288
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Received on Thu Apr 19 2012 - 17:30:03 PDT