Dear all,
As the title suggests I am having some problems loading pdb files. The C
terminus end GLY is giving me problems.
I started my initial structure by xleap and made my structres and used CGLY
for my c-terminus gly. Then after SA i used ptraj to extract structre in to
pdbs. then now I load those pdb files(qwe= loadpdb *.pdb command) and
xleap recognise the c-terminus gly as just GLY and adds oxygen to the
strucutre. This leads me in to error when I try to save ( atom does not have
type). In this case what should I do to pdb files or how to load pdb files
in to xleap.
thank you all in advanced,
Kim.
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Apr 19 2012 - 09:00:05 PDT
