________________________________
From: mehdi bagherpoor <ms.nightsky.gmail.com>
To: AMBER Mailing List <amber.ambermd.org>
Sent: Thursday, April 19, 2012 7:13 AM
Subject: [AMBER] How can I exert external force in the end of DNA?
Dear Amber user
I am M.Bagherpour an M.Sc student of physics at Institute for Advanced
Studies in Basic Science (www.iasbs.ac.ir).
I am using Amber software for DNA simulation (Amber10). Specially in my
project I need to exert external force in the end of DNA, The DNA that I
want to simulate has 17 bp.
Also what is the meaning of r1 & r2 & r3 & r4 & rk2 & rk3 in:
&rst iat=39,40,42,43, r1=0., r2=170., r3=170., r4=360., rk2 = 30.,
rk3 = 30.,
I would appreciate your help.
Looking forward to hearing from you.
Best regards
Mehdi
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Received on Thu Apr 19 2012 - 09:00:03 PDT
