Hi Filip,
The problem is that some of the residue coordinates in their respective pdb
file collide with some residues from the other protein's pdb file. When i
combine using text editor and view the pdb file using VMD, the structure
looks very weird...is there any way other that this?
On Wed, Apr 18, 2012 at 1:14 AM, filip fratev <filipfratev.yahoo.com> wrote:
> Hi,
> Just use some text editor or external software
> to combine pdb files into one pdb file and than use leap.
>
> All the best,
> Filip
>
>
> ________________________________
> From: Tommy Yap <tommyyap87.gmail.com>
> To: amber.ambermd.org
> Sent: Tuesday, April 17, 2012 10:51 AM
> Subject: [AMBER] Creating input file for Protein-protein simulation
>
> Dear,
>
> I have some trouble creating the input file for a protein protein
> simulation. I have 2 separate pdb files. How do I use them to run MD
> between these two proteins? Hope to hear from you soon. Thanks
>
> --
> Regards,
> Tommy Yap
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--
Regards,
Tommy Yap
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Received on Tue Apr 17 2012 - 20:30:03 PDT
