Re: [AMBER] problem converting AmbertoDesmond

From: Bill Ross <ross.cgl.ucsf.EDU>
Date: Tue, 17 Apr 2012 16:54:03 -0700

David A Case <case.biomaps.rutgers.edu> wrote:

> On Tue, Apr 17, 2012, Albert wrote:
> > when I turn the "set default flexible water on" and write the toplogy
> > and paramter files, it said:
> >
> > 1-4: angle 36275 36276 duplicates bond ('triangular' bond) or angle
> > ('square' bond)
>
> This is just an informational message; you can ignore it.

I wonder if this is a sign that the H-H bond is still appearing.

Bill

>
> ...dac
>
>
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Received on Tue Apr 17 2012 - 17:00:03 PDT
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