Re: [AMBER] Amber12 compile with "intel" err.

From: case <case.biomaps.rutgers.edu>
Date: Sat, 14 Apr 2012 13:55:38 -0400

On Sat, Apr 14, 2012, javacfish wrote:
>
> I follow the steps to build amber 12 as below:
>
> 1. ./configure intel
> 2. make install 
>
> ncfortran.h(26): catastrophic error: cannot open source file "NF_INT_IS_C_... not defined"
>   #   include "NF_INT_IS_C_... not defined"

As Jason mentioned, we haven't see netcdf code fail to compile in a long time.
In addition to giving compiler version, please let us know what operating
system (and 32-bit vs 64-bit) and any other information that may be relevant.

As a workaround, you can give the -nobintraj option to configure, which will
avoid building netcdf. But netcdf capability is quite useful for most people,
so this is only a workaround.

[To developers: we are using a pretty old version of netcdf (3.6.2). It may
be possible that the current version (4.2) would help. Does anyone on the
list have experience with more recent netcdf's, especially in the Amber
context?]

....dac


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Received on Sat Apr 14 2012 - 11:00:02 PDT
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