Re: [AMBER] Electrostatic potential calculation

From: case <>
Date: Fri, 13 Apr 2012 23:09:17 -0400

On Fri, Apr 13, 2012, Sudarshan Debnath wrote:
> I am a user of Amber11. I want to calculate electrostatic potential
> of a large protein molecule and map it on the molecular surface. Is
> it possible with out any 3rd party software (that does not present in
> Amber11 package)? If yes, what is the procedure? Please, let me know.

AmberTools12 has detailed instructions on visualizing electrostatic potentials
(see Section 8.4 of the Reference Manual). However, it looks like all of
these methods use external visualization software.


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Received on Fri Apr 13 2012 - 20:30:04 PDT
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