Re: [AMBER] AmberTools-1.5 installation problems

From: David A Case <>
Date: Mon, 2 Apr 2012 08:19:13 -0400

On Mon, Apr 02, 2012, Genzo Tanaka wrote:
> % sudo ./configure -macAccelerate -nopython gnu
> seemed fine, but with 2 errors:
> ./configure: line 2169: syntax error near unexpected token `&'
> ./configure: line 2169: ` ../../ &gt; Amber11_Conversion.log 2&gt;&amp;1'

It looks like somehow you have html codes (like "&gt;") instead of the real
characters (in this case, ">") in your files. I'm not sure how this could
have happened: how did you obtain the files?

> stdGroup.cpp: In member function 'double MTKpp::stdGroup::getCharge()':
> stdGroup.cpp:271: error: missing template arguments before '&' token
> stdGroup.cpp:271: error: 'lt' was not declared in this scope
> stdGroup.cpp:271: error: 'gt' declared as reference but not initialized

This looks like the same kind of problem: instead of ">" and "<" characters,
you have their html equivalents.


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Received on Mon Apr 02 2012 - 05:30:06 PDT
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