Re: [AMBER] problem with atom type

From: David A Case <case.biomaps.rutgers.edu>
Date: Tue, 21 Feb 2012 08:00:43 -0500

On Mon, Feb 20, 2012, pancham lal gupta wrote:

> "TYM" correspond to negatively charged tyrosine.
> "ARN" correspond to neutral arginine.
> they occur in protein when we increase the pH above 10.for neutral lysine
> "LYN" atom type information
> is there in amino_lib. but for negatively charged tyrosine "TYM" and
> neutral arginine "ARN" atom type information
> is not there.
>
> what should i do?
> should i proceed without these atom type information or can i create them?

If you need them, you will have to create them. See information at the R.E.D.
server, linked from http://ambermd.org.

...dac


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Received on Tue Feb 21 2012 - 05:30:02 PST
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