On Mon, Feb 13, 2012, Muhammad Khaled Tumbi wrote:
> I am Using PMEMD (.cuda) from AMBER11 package, Using GPU.
> i am trying to restrain only backbone atoms of DNA, but as stated
> in manual it is not available with PMEMD.
> can anyone suggest me any alternative.
You can use ntr=1 and the group input to restrain atoms. This works for both
pmemd and sander.
....dac
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Received on Mon Feb 13 2012 - 05:00:02 PST
