> What happens if you just type
>
> $AMBERHOME/bin/xleap -f leaprc.ff99SB
>
> Instead?
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
>
> On Feb 2, 2012, at 11:05 AM, vladanstefanovic.kg.ac.rs wrote:
>
>> ---------------------------- Original Message
>> ----------------------------
>> Subject: Problems with ff99SB force field reading
>> From: vladanstefanovic.kg.ac.rs
>> Date: Thu, February 2, 2012 3:59 pm
>> To: amber.ambermd.org
>> --------------------------------------------------------------------------
>>
>> Hello,
>>
>> I am beginner in amber;
>> I have installed amber11 in unix ubuntu operating system and now I`m
>> having some problems with loading ff99SB force field file in xleap;
>> I follow instructions in tutorial from ambermd.org: tutorial1- 2.1.2)
>> Loading the structure into Leap, and every time when I type
>> $AMBERHOME/exe/xleap -s -f $AMBERHOME/dat/leap/cmd/leaprc.ff99SB in
>> ubuntu
>> dolphin konsole, it displays:
>>
>> -I: Adding /usr/local/amber11/dat/leap/prep to search path.
>> -I: Adding /usr/local/amber11/dat/leap/lib to search path.
>> -I: Adding /usr/local/amber11/dat/leap/parm to search path.
>> -I: Adding /usr/local/amber11/dat/leap/cmd to search path.
>> -s: Ignoring startup file: leaprc
>> -f: Source /usr/local/amber11/dat/leap/cmd/leaprc.ff99SB.
>>
>> Segmentation fault
>>
>> and after that nothing happens;
>>
>> If anyone knows why this is happening please contact me;
>>
>> Vlada.
>>
>>Hi Jason,
I tried with $AMBERHOME/bin/xleap -f leaprc.ff99SB, as you suggested but
still everthing is same;
Have you any idea what next.
Vlada
>>
>>
>>
>>
>>
>>
>>
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>> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Fri Feb 03 2012 - 01:30:03 PST
