On Sun, Jan 29, 2012, leila karami wrote:
>
> 6) $AMBERHOME/exe/ambpdb -p protein.prmtop < protein.inpcrd > final_protein.pdb
>
> ERROR: syntax error.
What version of Amber are you using? The current version (in AmberTools 1.5)
doesn't have the general "syntax error" any more, but gives much more detailed
explanations of any problems that are found (presumably in reading the prmtop
file). So, maybe upgrading will help.
....dac
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Received on Sun Jan 29 2012 - 09:30:02 PST
